=>> Building biology/mothur build started at Sun May 4 23:24:07 EDT 2025 port directory: /usr/ports/biology/mothur package name: mothur-1.48.2 building for: FreeBSD 13amd64-weekly-desktop-job-02 13.4-RELEASE-p4 FreeBSD 13.4-RELEASE-p4 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 830 Mar 1 07:51 /usr/ports/biology/mothur/Makefile Ports top last git commit: 57a50b106b87 Ports top unclean checkout: yes Port dir last git commit: 46492d92adae Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1402000 Jail OSVERSION: 1304000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1304000 UNAME_v=FreeBSD 13.4-RELEASE-p4 UNAME_r=13.4-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/mnt/data/.m/13amd64-weekly-desktop/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=screen GID=0 OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 UID=0 PWD=/mnt/data/.m/13amd64-weekly-desktop/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=13amd64-weekly-desktop SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/mnt/data/.m/13amd64-weekly-desktop/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mothur/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mothur/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mothur/work/.cache HOME=/wrkdirs/usr/ports/biology/mothur/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mothur/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mothur/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/mothur/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/mothur/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/mothur/work/.cache HOME=/wrkdirs/usr/ports/biology/mothur/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/mothur/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/mothur/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/usr/local/llvm15/bin/clang" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/usr/local/llvm15/bin/clang-cpp" CPPFLAGS="-I/usr/local/include -isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="/usr/local/llvm15/bin/clang++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mothur" EXAMPLESDIR="share/examples/mothur" DATADIR="share/mothur" WWWDIR="www/mothur" ETCDIR="etc/mothur" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mothur DOCSDIR=/usr/local/share/doc/mothur EXAMPLESDIR=/usr/local/share/examples/mothur WWWDIR=/usr/local/www/mothur ETCDIR=/usr/local/etc/mothur --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # Work around some weirdness when fetching golang modules GO_TAGS+=netcgo .if ${.CURDIR:M*/www/chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/www/ungoogled-chromium*} MAKE_JOBS_NUMBER=24 .endif .if ${.CURDIR:M*/lang/rust*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/lang/gcc*} MAKE_JOBS_NUMBER=10 .endif .if ${.CURDIR:M*/www/iridium*} MAKE_JOBS_NUMBER=16 .endif .if ${.CURDIR:M*/devel/electron*} MAKE_JOBS_NUMBER=20 .endif .if ${.CURDIR:M*/databases/mongodb*} MAKE_JOBS_NUMBER=12 .endif .if ${.CURDIR:M*/devel/llvm*} MAKE_JOBS_NUMBER=16 .endif # Speed things up a bit MAKE_JOBS_NUMBER?=8 #### #### #MAKE_JOBS_NUMBER?=4 # Alows us to build ports non-interactivly DISABLE_LICENSES=yes LICENSES_ACCEPTED+= DCC # Enable SNDIO on anything that supports it #OPTIONS_SET+=PULSEAUDIO OPTIONS_SET+=SNDIO # Yes we have MS Windows x11-fonts_webfonts_SET+=EXTRAFONTS CLEARTYPE # Desktop Specific Options sysutils_gksu_UNSET+=NAUTILUS x11-wm_compiz-fusion_UNSET+=EMERALD accessibility_redshift_SET+=GUI VIDMODE # These ports default to other audio servers, audio_espeak_UNSET+=PORTAUDIO www_qt5-webengine_UNSET+=ALSA www_qt6-webengine_UNSET+=ALSA audio_rhvoice_UNSET+=AO comms_morse_UNSET+=OSS audio_harp_UNSET+=OSS # Somehow these options are being set and result in ports being rebuilt needlessly becuase they are actually turned off audio_alsa-plugins_SET+=FFMPEG JACK PULSEAUDIO SAMPLERATE SPEEX #### Misc Poudriere #### .include "/etc/make.conf.ports_env" ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> mothur-1.48.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.0.6.pkg [13amd64-weekly-desktop-job-02] Installing pkg-2.0.6... [13amd64-weekly-desktop-job-02] Extracting pkg-2.0.6: .......... done ===> mothur-1.48.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of mothur-1.48.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by mothur-1.48.2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by mothur-1.48.2 for building => SHA256 Checksum OK for mothur-mothur-v1.48.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Fetching all distfiles required by mothur-1.48.2 for building ===> Extracting for mothur-1.48.2 => SHA256 Checksum OK for mothur-mothur-v1.48.2_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Patching for mothur-1.48.2 ===> Applying FreeBSD patches for mothur-1.48.2 from /usr/ports/biology/mothur/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> mothur-1.48.2 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.37.pkg [13amd64-weekly-desktop-job-02] Installing bash-5.2.37... [13amd64-weekly-desktop-job-02] `-- Installing gettext-runtime-0.23.1... [13amd64-weekly-desktop-job-02] | `-- Installing indexinfo-0.3.1_1... [13amd64-weekly-desktop-job-02] | `-- Extracting indexinfo-0.3.1_1: . done [13amd64-weekly-desktop-job-02] `-- Extracting gettext-runtime-0.23.1: .......... done [13amd64-weekly-desktop-job-02] `-- Installing readline-8.2.13_2... [13amd64-weekly-desktop-job-02] `-- Extracting readline-8.2.13_2: .......... done [13amd64-weekly-desktop-job-02] Extracting bash-5.2.37: .......... done ===> mothur-1.48.2 depends on executable: bash - found ===> Returning to build of mothur-1.48.2 ===> mothur-1.48.2 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [13amd64-weekly-desktop-job-02] Installing gmake-4.4.1... [13amd64-weekly-desktop-job-02] Extracting gmake-4.4.1: .......... done ===> mothur-1.48.2 depends on package: gmake>=4.4.1 - found ===> Returning to build of mothur-1.48.2 ===> mothur-1.48.2 depends on executable: llvm-config15 - not found ===> Installing existing package /packages/All/llvm15-15.0.7_10.pkg [13amd64-weekly-desktop-job-02] Installing llvm15-15.0.7_10... [13amd64-weekly-desktop-job-02] `-- Installing libedit-3.1.20240808,1... [13amd64-weekly-desktop-job-02] `-- Extracting libedit-3.1.20240808,1: .......... done [13amd64-weekly-desktop-job-02] `-- Installing lua53-5.3.6_1... [13amd64-weekly-desktop-job-02] `-- Extracting lua53-5.3.6_1: .......... done [13amd64-weekly-desktop-job-02] `-- Installing perl5-5.36.3_2... [13amd64-weekly-desktop-job-02] `-- Extracting perl5-5.36.3_2: .......... done [13amd64-weekly-desktop-job-02] `-- Installing python311-3.11.11... [13amd64-weekly-desktop-job-02] | `-- Installing libffi-3.4.6... [13amd64-weekly-desktop-job-02] | `-- Extracting libffi-3.4.6: .......... done [13amd64-weekly-desktop-job-02] | `-- Installing mpdecimal-4.0.0... [13amd64-weekly-desktop-job-02] | `-- Extracting mpdecimal-4.0.0: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting python311-3.11.11: .......... done [13amd64-weekly-desktop-job-02] `-- Installing zstd-1.5.7... [13amd64-weekly-desktop-job-02] | `-- Installing liblz4-1.10.0,1... [13amd64-weekly-desktop-job-02] | `-- Extracting liblz4-1.10.0,1: .......... done [13amd64-weekly-desktop-job-02] `-- Extracting zstd-1.5.7: .......... done [13amd64-weekly-desktop-job-02] Extracting llvm15-15.0.7_10: .......... done ===== Message from python311-3.11.11: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> mothur-1.48.2 depends on executable: llvm-config15 - found ===> Returning to build of mothur-1.48.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> mothur-1.48.2 depends on shared library: libreadline.so.8 - found (/usr/local/lib/libreadline.so.8) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Configuring for mothur-1.48.2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building for mothur-1.48.2 /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/accuracy.o source/calculators/accuracy.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/ace.o source/calculators/ace.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/bergerparker.o source/calculators/bergerparker.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/boneh.o source/calculators/boneh.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/bootstrap.o source/calculators/bootstrap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/bstick.o source/calculators/bstick.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/calculator.o source/calculators/calculator.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/canberra.o source/calculators/canberra.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/chao1.o source/calculators/chao1.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/coverage.o source/calculators/coverage.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/diversityutils.o source/calculators/diversityutils.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/eachgapdist.o source/calculators/eachgapdist.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/eachgapignore.o source/calculators/eachgapignore.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/efron.o source/calculators/efron.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/erarefaction.o source/calculators/erarefaction.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/f1score.o source/calculators/f1score.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/fdr.o source/calculators/fdr.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/fn.o source/calculators/fn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/fp.o source/calculators/fp.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/fpfn.o source/calculators/fpfn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/geom.o source/calculators/geom.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/goodscoverage.o source/calculators/goodscoverage.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/gower.o source/calculators/gower.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/hamming.o source/calculators/hamming.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/heip.o source/calculators/heip.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/hellinger.o source/calculators/hellinger.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/igabundance.o source/calculators/igabundance.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/ignoregaps.o source/calculators/ignoregaps.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/igrarefaction.o source/calculators/igrarefaction.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/invsimpson.o source/calculators/invsimpson.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/jackknife.o source/calculators/jackknife.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/kimura.o source/calculators/kimura.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/kmerdist.o source/calculators/kmerdist.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/lnabundance.o source/calculators/lnabundance.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/lnrarefaction.o source/calculators/lnrarefaction.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/lnshift.o source/calculators/lnshift.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/logsd.o source/calculators/logsd.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/lsabundance.o source/calculators/lsabundance.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/lsrarefaction.o source/calculators/lsrarefaction.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/manhattan.o source/calculators/manhattan.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/mcc.o source/calculators/mcc.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/memchi2.o source/calculators/memchi2.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/memchord.o source/calculators/memchord.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/memeuclidean.o source/calculators/memeuclidean.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/mempearson.o source/calculators/mempearson.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/metroig.o source/calculators/metroig.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/metrolognormal.o source/calculators/metrolognormal.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/metrologstudent.o source/calculators/metrologstudent.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/metrosichel.o source/calculators/metrosichel.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/npshannon.o source/calculators/npshannon.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/npv.o source/calculators/npv.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/odum.o source/calculators/odum.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/onegapdist.o source/calculators/onegapdist.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/onegapignore.o source/calculators/onegapignore.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/parsimony.o source/calculators/parsimony.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/ppv.o source/calculators/ppv.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/prng.o source/calculators/prng.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/qstat.o source/calculators/qstat.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sensitivity.o source/calculators/sensitivity.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/shannon.o source/calculators/shannon.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/shannoneven.o source/calculators/shannoneven.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/shannonrange.o source/calculators/shannonrange.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedace.o source/calculators/sharedace.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedanderbergs.o source/calculators/sharedanderbergs.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedbraycurtis.o source/calculators/sharedbraycurtis.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedchao1.o source/calculators/sharedchao1.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedjabund.o source/calculators/sharedjabund.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedjackknife.o source/calculators/sharedjackknife.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedjclass.o source/calculators/sharedjclass.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedjest.o source/calculators/sharedjest.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedjsd.o source/calculators/sharedjsd.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedkstest.o source/calculators/sharedkstest.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedkulczynski.o source/calculators/sharedkulczynski.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedkulczynskicody.o source/calculators/sharedkulczynskicody.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedlennon.o source/calculators/sharedlennon.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedmarczewski.o source/calculators/sharedmarczewski.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedmorisitahorn.o source/calculators/sharedmorisitahorn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedochiai.o source/calculators/sharedochiai.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedrjsd.o source/calculators/sharedrjsd.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedsobs.o source/calculators/sharedsobs.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedsobscollectsummary.o source/calculators/sharedsobscollectsummary.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedsorabund.o source/calculators/sharedsorabund.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedsorclass.o source/calculators/sharedsorclass.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedsorest.o source/calculators/sharedsorest.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedthetan.o source/calculators/sharedthetan.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sharedthetayc.o source/calculators/sharedthetayc.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/shen.o source/calculators/shen.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/siabundance.o source/calculators/siabundance.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/simpson.o source/calculators/simpson.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/simpsoneven.o source/calculators/simpsoneven.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sirarefaction.o source/calculators/sirarefaction.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/sishift.o source/calculators/sishift.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/smithwilson.o source/calculators/smithwilson.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/soergel.o source/calculators/soergel.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/solow.o source/calculators/solow.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/spearman.o source/calculators/spearman.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/speciesprofile.o source/calculators/speciesprofile.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/specificity.o source/calculators/specificity.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/structchi2.o source/calculators/structchi2.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/structchord.o source/calculators/structchord.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/structeuclidean.o source/calculators/structeuclidean.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/structkulczynski.o source/calculators/structkulczynski.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/structpearson.o source/calculators/structpearson.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/tn.o source/calculators/tn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/tp.o source/calculators/tp.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/tptn.o source/calculators/tptn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/unweighted.o source/calculators/unweighted.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/uvest.o source/calculators/uvest.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/weighted.o source/calculators/weighted.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calculators/whittaker.o source/calculators/whittaker.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/bellerophon.o source/chimera/bellerophon.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/ccode.o source/chimera/ccode.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/chimeracheckrdp.o source/chimera/chimeracheckrdp.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/chimerarealigner.o source/chimera/chimerarealigner.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/chimeraslayer.o source/chimera/chimeraslayer.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/decalc.o source/chimera/decalc.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/maligner.o source/chimera/maligner.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/mothurchimera.o source/chimera/mothurchimera.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/myPerseus.o source/chimera/myPerseus.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/pintail.o source/chimera/pintail.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/chimera/slayer.o source/chimera/slayer.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/alignnode.o source/classifier/alignnode.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/aligntree.o source/classifier/aligntree.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/bayesian.o source/classifier/bayesian.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/classify.o source/classifier/classify.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/kmernode.o source/classifier/kmernode.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/kmertree.o source/classifier/kmertree.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/knn.o source/classifier/knn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/phylosummary.o source/classifier/phylosummary.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/phylotree.o source/classifier/phylotree.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/taxonomyequalizer.o source/classifier/taxonomyequalizer.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/classifier/taxonomynode.o source/classifier/taxonomynode.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clearcut/clearcut.o source/clearcut/clearcut.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clearcut/cmdargs.o source/clearcut/cmdargs.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clearcut/distclearcut.o source/clearcut/distclearcut.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clearcut/dmat.o source/clearcut/dmat.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clearcut/fasta.o source/clearcut/fasta.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clearcut/getopt_long.o source/clearcut/getopt_long.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/aligncheckcommand.o source/commands/aligncheckcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/aligncommand.o source/commands/aligncommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/alignmusclecommand.o source/commands/alignmusclecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/amovacommand.o source/commands/amovacommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/anosimcommand.o source/commands/anosimcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/binsequencecommand.o source/commands/binsequencecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/biominfocommand.o source/commands/biominfocommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimerabellerophoncommand.o source/commands/chimerabellerophoncommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimeraccodecommand.o source/commands/chimeraccodecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimeracheckcommand.o source/commands/chimeracheckcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimeraperseuscommand.o source/commands/chimeraperseuscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimerapintailcommand.o source/commands/chimerapintailcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimeraslayercommand.o source/commands/chimeraslayercommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimerauchimecommand.o source/commands/chimerauchimecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chimeravsearchcommand.o source/commands/chimeravsearchcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/chopseqscommand.o source/commands/chopseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/classifyotucommand.o source/commands/classifyotucommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/classifyseqscommand.o source/commands/classifyseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/classifysvmsharedcommand.o source/commands/classifysvmsharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/classifytreecommand.o source/commands/classifytreecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/clearcutcommand.o source/commands/clearcutcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/clustercommand.o source/commands/clustercommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/clusterdoturcommand.o source/commands/clusterdoturcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/clusterfitcommand.o source/commands/clusterfitcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/clusterfragmentscommand.o source/commands/clusterfragmentscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/clustersplitcommand.o source/commands/clustersplitcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/collectcommand.o source/commands/collectcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/collectsharedcommand.o source/commands/collectsharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/consensusseqscommand.o source/commands/consensusseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/cooccurrencecommand.o source/commands/cooccurrencecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/corraxescommand.o source/commands/corraxescommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/countgroupscommand.o source/commands/countgroupscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/countseqscommand.o source/commands/countseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/createdatabasecommand.o source/commands/createdatabasecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/degapseqscommand.o source/commands/degapseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/deuniqueseqscommand.o source/commands/deuniqueseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/deuniquetreecommand.o source/commands/deuniquetreecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/distancecommand.o source/commands/distancecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/distsharedcommand.o source/commands/distsharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/diversityestimatorcommand.o source/commands/diversityestimatorcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/fastaqinfocommand.o source/commands/fastaqinfocommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/filterseqscommand.o source/commands/filterseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/filtersharedcommand.o source/commands/filtersharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getcoremicrobiomecommand.o source/commands/getcoremicrobiomecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getcurrentcommand.o source/commands/getcurrentcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getdistscommand.o source/commands/getdistscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getgroupcommand.o source/commands/getgroupcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getgroupscommand.o source/commands/getgroupscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getlabelcommand.o source/commands/getlabelcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getlineagecommand.o source/commands/getlineagecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getlistcountcommand.o source/commands/getlistcountcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getmetacommunitycommand.o source/commands/getmetacommunitycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getmimarkspackagecommand.o source/commands/getmimarkspackagecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getoturepcommand.o source/commands/getoturepcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getotuscommand.o source/commands/getotuscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getrabundcommand.o source/commands/getrabundcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getrelabundcommand.o source/commands/getrelabundcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getsabundcommand.o source/commands/getsabundcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getseqscommand.o source/commands/getseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/getsharedotucommand.o source/commands/getsharedotucommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/heatmapcommand.o source/commands/heatmapcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/heatmapsimcommand.o source/commands/heatmapsimcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/helpcommand.o source/commands/helpcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/homovacommand.o source/commands/homovacommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/indicatorcommand.o source/commands/indicatorcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/kruskalwalliscommand.o source/commands/kruskalwalliscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/lefsecommand.o source/commands/lefsecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/libshuffcommand.o source/commands/libshuffcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/listotuscommand.o source/commands/listotuscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/listseqscommand.o source/commands/listseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makebiomcommand.o source/commands/makebiomcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makeclrcommand.o source/commands/makeclrcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makecontigscommand.o source/commands/makecontigscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makefastqcommand.o source/commands/makefastqcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makefilecommand.o source/commands/makefilecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makegroupcommand.o source/commands/makegroupcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makelefsecommand.o source/commands/makelefsecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makelookupcommand.o source/commands/makelookupcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/makesharedcommand.o source/commands/makesharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mantelcommand.o source/commands/mantelcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mergecountcommand.o source/commands/mergecountcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mergefilecommand.o source/commands/mergefilecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mergegroupscommand.o source/commands/mergegroupscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mergeotuscommand.o source/commands/mergeotuscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mergesfffilecommand.o source/commands/mergesfffilecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mergetaxsummarycommand.o source/commands/mergetaxsummarycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/metastatscommand.o source/commands/metastatscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mgclustercommand.o source/commands/mgclustercommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/mimarksattributescommand.o source/commands/mimarksattributescommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/newcommandtemplate.o source/commands/newcommandtemplate.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/nmdscommand.o source/commands/nmdscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/nocommands.o source/commands/nocommands.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/normalizesharedcommand.o source/commands/normalizesharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/otuassociationcommand.o source/commands/otuassociationcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/otuhierarchycommand.o source/commands/otuhierarchycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/pairwiseseqscommand.o source/commands/pairwiseseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/parsimonycommand.o source/commands/parsimonycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/pcacommand.o source/commands/pcacommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/pcoacommand.o source/commands/pcoacommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/pcrseqscommand.o source/commands/pcrseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/phylodiversitycommand.o source/commands/phylodiversitycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/phylotypecommand.o source/commands/phylotypecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/preclustercommand.o source/commands/preclustercommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/primerdesigncommand.o source/commands/primerdesigncommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/quitcommand.o source/commands/quitcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/rarefactcommand.o source/commands/rarefactcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/rarefactsharedcommand.o source/commands/rarefactsharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/removedistscommand.o source/commands/removedistscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/removegroupscommand.o source/commands/removegroupscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/removelineagecommand.o source/commands/removelineagecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/removeotuscommand.o source/commands/removeotuscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/removerarecommand.o source/commands/removerarecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/removeseqscommand.o source/commands/removeseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/renamefilecommand.o source/commands/renamefilecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/renameseqscommand.o source/commands/renameseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/reversecommand.o source/commands/reversecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/screenseqscommand.o source/commands/screenseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/sensspeccommand.o source/commands/sensspeccommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/seqerrorcommand.o source/commands/seqerrorcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/seqsummarycommand.o source/commands/seqsummarycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/setcurrentcommand.o source/commands/setcurrentcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/setdircommand.o source/commands/setdircommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/setlogfilecommand.o source/commands/setlogfilecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/setseedcommand.o source/commands/setseedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/sffinfocommand.o source/commands/sffinfocommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/sffmultiplecommand.o source/commands/sffmultiplecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/shhhercommand.o source/commands/shhhercommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/shhhseqscommand.o source/commands/shhhseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/sortseqscommand.o source/commands/sortseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/sparcccommand.o source/commands/sparcccommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/splitabundcommand.o source/commands/splitabundcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/splitgroupscommand.o source/commands/splitgroupscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/sracommand.o source/commands/sracommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/srainfocommand.o source/commands/srainfocommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/subsamplecommand.o source/commands/subsamplecommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/summarycommand.o source/commands/summarycommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/summaryqualcommand.o source/commands/summaryqualcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/summarysharedcommand.o source/commands/summarysharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/summarytaxcommand.o source/commands/summarytaxcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/systemcommand.o source/commands/systemcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/translateseqscommand.o source/commands/translateseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/treesharedcommand.o source/commands/treesharedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/trimflowscommand.o source/commands/trimflowscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/trimseqscommand.o source/commands/trimseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/unifracunweightedcommand.o source/commands/unifracunweightedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/unifracweightedcommand.o source/commands/unifracweightedcommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/uniqueseqscommand.o source/commands/uniqueseqscommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commands/venncommand.o source/commands/venncommand.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/communitytype/communitytype.o source/communitytype/communitytype.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/communitytype/kmeans.o source/communitytype/kmeans.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/communitytype/pam.o source/communitytype/pam.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/communitytype/qFinderDMM.o source/communitytype/qFinderDMM.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/alignment.o source/datastructures/alignment.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/alignmentcell.o source/datastructures/alignmentcell.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/alignmentdb.o source/datastructures/alignmentdb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/aminoacid.o source/datastructures/aminoacid.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/biom.o source/datastructures/biom.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/biomhdf5.o source/datastructures/biomhdf5.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/biomsimple.o source/datastructures/biomsimple.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/contigsreport.o source/datastructures/contigsreport.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/counttable.o source/datastructures/counttable.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/designmap.o source/datastructures/designmap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/distancedb.o source/datastructures/distancedb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/fastamap.o source/datastructures/fastamap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/fastqread.o source/datastructures/fastqread.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/filefile.o source/datastructures/filefile.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/flowdata.o source/datastructures/flowdata.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/fullmatrix.o source/datastructures/fullmatrix.cpp source/datastructures/filefile.cpp:34:2: warning: '/*' within block comment [-Wcomment] /* ^ /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/groupmap.o source/datastructures/groupmap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/kmer.o source/datastructures/kmer.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/kmeralign.o source/datastructures/kmeralign.cpp 1 warning generated. /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/kmerdb.o source/datastructures/kmerdb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/listvector.o source/datastructures/listvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/nameassignment.o source/datastructures/nameassignment.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/oligos.o source/datastructures/oligos.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/optiblastmatrix.o source/datastructures/optiblastmatrix.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/optidata.o source/datastructures/optidata.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/optidb.o source/datastructures/optidb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/optimatrix.o source/datastructures/optimatrix.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/optirefmatrix.o source/datastructures/optirefmatrix.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/ordervector.o source/datastructures/ordervector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/picrust.o source/datastructures/picrust.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/protein.o source/datastructures/protein.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/proteindb.o source/datastructures/proteindb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/qualityscores.o source/datastructures/qualityscores.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/rabundfloatvector.o source/datastructures/rabundfloatvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/rabundvector.o source/datastructures/rabundvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/report.o source/datastructures/report.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sabundvector.o source/datastructures/sabundvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sequence.o source/datastructures/sequence.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sequencecountparser.o source/datastructures/sequencecountparser.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sequencedb.o source/datastructures/sequencedb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sequenceparser.o source/datastructures/sequenceparser.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sffheader.o source/datastructures/sffheader.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sffread.o source/datastructures/sffread.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedclrvector.o source/datastructures/sharedclrvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedclrvectors.o source/datastructures/sharedclrvectors.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedlistvector.o source/datastructures/sharedlistvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedordervector.o source/datastructures/sharedordervector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedrabundfloatvector.o source/datastructures/sharedrabundfloatvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedrabundfloatvectors.o source/datastructures/sharedrabundfloatvectors.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sharedrabundvectors.o source/datastructures/sharedrabundvectors.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sparsedistancematrix.o source/datastructures/sparsedistancematrix.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/sparsematrix.o source/datastructures/sparsematrix.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/suffixdb.o source/datastructures/suffixdb.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/suffixnodes.o source/datastructures/suffixnodes.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/suffixtree.o source/datastructures/suffixtree.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/taxonomy.o source/datastructures/taxonomy.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/tree.o source/datastructures/tree.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/treemap.o source/datastructures/treemap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/datastructures/treenode.o source/datastructures/treenode.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/engines/batchengine.o source/engines/batchengine.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/engines/interactengine.o source/engines/interactengine.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/engines/scriptengine.o source/engines/scriptengine.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/metastats/mothurfisher.o source/metastats/mothurfisher.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/metastats/mothurmetastats.o source/metastats/mothurmetastats.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/readblast.o source/read/readblast.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/readcluster.o source/read/readcluster.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/readcolumn.o source/read/readcolumn.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/readphylip.o source/read/readphylip.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/readphylipvector.o source/read/readphylipvector.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/readtree.o source/read/readtree.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/splitmatrix.o source/read/splitmatrix.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/read/treereader.o source/read/treereader.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/svm/svm.o source/svm/svm.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/alignreport.o source/alignreport.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/averagelinkage.o source/averagelinkage.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/calcsparcc.o source/calcsparcc.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/cluster.o source/cluster.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/clusterclassic.o source/clusterclassic.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/collect.o source/collect.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commandfactory.o source/commandfactory.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/commandoptionparser.o source/commandoptionparser.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/completelinkage.o source/completelinkage.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/consensus.o source/consensus.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/currentfile.o source/currentfile.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/dlibshuff.o source/dlibshuff.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/fileoutput.o source/fileoutput.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/gotohoverlap.o source/gotohoverlap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/heatmap.o source/heatmap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/heatmapsim.o source/heatmapsim.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/inputdata.o source/inputdata.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/libshuff.o source/libshuff.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/linearalgebra.o source/linearalgebra.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/mothur.o source/mothur.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/mothurout.o source/mothurout.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/myseqdist.o source/myseqdist.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/nast.o source/nast.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/needlemanoverlap.o source/needlemanoverlap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/noalign.o source/noalign.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/opticluster.o source/opticluster.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/optifitcluster.o source/optifitcluster.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/optionparser.o source/optionparser.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/overlap.o source/overlap.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/raredisplay.o source/raredisplay.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/rarefact.o source/rarefact.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/refchimeratest.o source/refchimeratest.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/sensspeccalc.o source/sensspeccalc.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/seqnoise.o source/seqnoise.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/singlelinkage.o source/singlelinkage.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/slibshuff.o source/slibshuff.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/subsample.o source/subsample.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/summary.o source/summary.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/trialSwap2.o source/trialSwap2.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/trimoligos.o source/trimoligos.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/utils.o source/utils.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/validcalculator.o source/validcalculator.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/validparameter.o source/validparameter.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/venn.o source/venn.cpp source/utils.cpp:1612:1: warning: '/*' within block comment [-Wcomment] /*********************************************************************** ^ source/utils.cpp:1624:1: warning: '/*' within block comment [-Wcomment] /***********************************************************************/ ^ /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/vsearchfileparser.o source/vsearchfileparser.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/weightedlinkage.o source/weightedlinkage.cpp /usr/local/llvm15/bin/clang++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O3 -std=c++11 -pthread -DVERSION="\"1.48.2\"" -DRELEASE_DATE="\"11/4/24\"" -DUSE_READLINE -Isource -I source/calculators/ -I source/chimera/ -I source/classifier/ -I source/clearcut/ -I source/commands/ -I source/communitytype/ -I source/datastructures/ -I source/engines/ -I source/metastats/ -I source/read/ -I source/svm/ -I/usr/local/include -isystem /usr/local/include -c -o source/wilcox.o source/wilcox.cpp cd source/uchime_src && export CXX=/usr/local/llvm15/bin/clang++ && /usr/local/bin/gmake clean && /usr/local/bin/gmake && mv uchime ../../ && cd .. gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/mothur/work/mothur-1.48.2/source/uchime_src' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/mothur/work/mothur-1.48.2/source/uchime_src' gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/mothur/work/mothur-1.48.2/source/uchime_src' /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o addtargets2.o addtargets2.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o alignchime.o alignchime.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o alignchimel.o alignchimel.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o alnparams.o alnparams.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o alpha.o alpha.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o alpha2.o alpha2.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o fractid.o fractid.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o getparents.o getparents.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o globalalign2.o globalalign2.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o make3way.o make3way.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o mx.o mx.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o myutils.o myutils.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o path.o path.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o searchchime.o searchchime.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o seqdb.o seqdb.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o setnucmx.o setnucmx.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o sfasta.o sfasta.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o tracebackbit.o tracebackbit.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o uchime_main.o uchime_main.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o usort.o usort.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o viterbifast.o viterbifast.cpp /usr/local/llvm15/bin/clang++ -O3 -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 -I/usr/local/include -isystem /usr/local/include -c -o writechhit.o writechhit.cpp uchime_main.cpp:186:19: warning: binding dereferenced null pointer to reference has undefined behavior [-Wnull-dereference] AlnParams &AP = *(AlnParams *) 0; ^~~~~~~~~~~~~~~~ uchime_main.cpp:187:23: warning: binding dereferenced null pointer to reference has undefined behavior [-Wnull-dereference] AlnHeuristics &AH = *(AlnHeuristics *) 0; ^~~~~~~~~~~~~~~~~~~~ uchime_main.cpp:188:19: warning: binding dereferenced null pointer to reference has undefined behavior [-Wnull-dereference] HSPFinder &HF = *(HSPFinder *) 0; ^~~~~~~~~~~~~~~~ 3 warnings generated. /usr/local/llvm15/bin/clang++ -g -o uchime addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o -L/usr/local/lib -lreadline gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/mothur/work/mothur-1.48.2/source/uchime_src' 2 warnings generated. /usr/local/llvm15/bin/clang++ -L/usr/local/lib -fstack-protector-strong -std=c++11 -pthread -Lsource/calculators/ -Lsource/chimera/ -Lsource/classifier/ -Lsource/clearcut/ -Lsource/commands/ -Lsource/communitytype/ -Lsource/datastructures/ -Lsource/engines/ -Lsource/metastats/ -Lsource/read/ -Lsource/svm/ -o mothur source/calculators/accuracy.o source/calculators/ace.o source/calculators/bergerparker.o source/calculators/boneh.o source/calculators/bootstrap.o source/calculators/bstick.o source/calculators/calculator.o source/calculators/canberra.o source/calculators/chao1.o source/calculators/coverage.o source/calculators/diversityutils.o source/calculators/eachgapdist.o source/calculators/eachgapignore.o source/calculators/efron.o source/calculators/erarefaction.o source/calculators/f1score.o source/calculators/fdr.o source/calculators/fn.o source/calculators/fp.o source/calculators/fpfn.o source/calculators/geom.o source/calculators/goodscoverage.o source/calculators/gower.o source/calculators/hamming.o source/calculators/heip.o source/calculators/hellinger.o source/calculators/igabundance.o source/calculators/ignoregaps.o source/calculators/igrarefaction.o source/calculators/invsimpson.o source/calculators/jackknife.o source/calculators/kimura.o source/calculators/kmerdist.o source/calculators/lnabundance.o source/calculators/lnrarefaction.o source/calculators/lnshift.o source/calculators/logsd.o source/calculators/lsabundance.o source/calculators/lsrarefaction.o source/calculators/manhattan.o source/calculators/mcc.o source/calculators/memchi2.o source/calculators/memchord.o source/calculators/memeuclidean.o source/calculators/mempearson.o source/calculators/metroig.o source/calculators/metrolognormal.o source/calculators/metrologstudent.o source/calculators/metrosichel.o source/calculators/npshannon.o source/calculators/npv.o source/calculators/odum.o source/calculators/onegapdist.o source/calculators/onegapignore.o source/calculators/parsimony.o source/calculators/ppv.o source/calculators/prng.o source/calculators/qstat.o source/calculators/sensitivity.o source/calculators/shannon.o source/calculators/shannoneven.o source/calculators/shannonrange.o source/calculators/sharedace.o source/calculators/sharedanderbergs.o source/calculators/sharedbraycurtis.o source/calculators/sharedchao1.o source/calculators/sharedjabund.o source/calculators/sharedjackknife.o source/calculators/sharedjclass.o source/calculators/sharedjest.o source/calculators/sharedjsd.o source/calculators/sharedkstest.o source/calculators/sharedkulczynski.o source/calculators/sharedkulczynskicody.o source/calculators/sharedlennon.o source/calculators/sharedmarczewski.o source/calculators/sharedmorisitahorn.o source/calculators/sharedochiai.o source/calculators/sharedrjsd.o source/calculators/sharedsobs.o source/calculators/sharedsobscollectsummary.o source/calculators/sharedsorabund.o source/calculators/sharedsorclass.o source/calculators/sharedsorest.o source/calculators/sharedthetan.o source/calculators/sharedthetayc.o source/calculators/shen.o source/calculators/siabundance.o source/calculators/simpson.o source/calculators/simpsoneven.o source/calculators/sirarefaction.o source/calculators/sishift.o source/calculators/smithwilson.o source/calculators/soergel.o source/calculators/solow.o source/calculators/spearman.o source/calculators/speciesprofile.o source/calculators/specificity.o source/calculators/structchi2.o source/calculators/structchord.o source/calculators/structeuclidean.o source/calculators/structkulczynski.o source/calculators/structpearson.o source/calculators/tn.o source/calculators/tp.o source/calculators/tptn.o source/calculators/unweighted.o source/calculators/uvest.o source/calculators/weighted.o source/calculators/whittaker.o source/chimera/bellerophon.o source/chimera/ccode.o source/chimera/chimeracheckrdp.o source/chimera/chimerarealigner.o source/chimera/chimeraslayer.o source/chimera/decalc.o source/chimera/maligner.o source/chimera/mothurchimera.o source/chimera/myPerseus.o source/chimera/pintail.o source/chimera/slayer.o source/classifier/alignnode.o source/classifier/aligntree.o source/classifier/bayesian.o source/classifier/classify.o source/classifier/kmernode.o source/classifier/kmertree.o source/classifier/knn.o source/classifier/phylosummary.o source/classifier/phylotree.o source/classifier/taxonomyequalizer.o source/classifier/taxonomynode.o source/clearcut/clearcut.o source/clearcut/cmdargs.o source/clearcut/distclearcut.o source/clearcut/dmat.o source/clearcut/fasta.o source/clearcut/getopt_long.o source/commands/aligncheckcommand.o source/commands/aligncommand.o source/commands/alignmusclecommand.o source/commands/amovacommand.o source/commands/anosimcommand.o source/commands/binsequencecommand.o source/commands/biominfocommand.o source/commands/chimerabellerophoncommand.o source/commands/chimeraccodecommand.o source/commands/chimeracheckcommand.o source/commands/chimeraperseuscommand.o source/commands/chimerapintailcommand.o source/commands/chimeraslayercommand.o source/commands/chimerauchimecommand.o source/commands/chimeravsearchcommand.o source/commands/chopseqscommand.o source/commands/classifyotucommand.o source/commands/classifyseqscommand.o source/commands/classifysvmsharedcommand.o source/commands/classifytreecommand.o source/commands/clearcutcommand.o source/commands/clustercommand.o source/commands/clusterdoturcommand.o source/commands/clusterfitcommand.o source/commands/clusterfragmentscommand.o source/commands/clustersplitcommand.o source/commands/collectcommand.o source/commands/collectsharedcommand.o source/commands/consensusseqscommand.o source/commands/cooccurrencecommand.o source/commands/corraxescommand.o source/commands/countgroupscommand.o source/commands/countseqscommand.o source/commands/createdatabasecommand.o source/commands/degapseqscommand.o source/commands/deuniqueseqscommand.o source/commands/deuniquetreecommand.o source/commands/distancecommand.o source/commands/distsharedcommand.o source/commands/diversityestimatorcommand.o source/commands/fastaqinfocommand.o source/commands/filterseqscommand.o source/commands/filtersharedcommand.o source/commands/getcoremicrobiomecommand.o source/commands/getcurrentcommand.o source/commands/getdistscommand.o source/commands/getgroupcommand.o source/commands/getgroupscommand.o source/commands/getlabelcommand.o source/commands/getlineagecommand.o source/commands/getlistcountcommand.o source/commands/getmetacommunitycommand.o source/commands/getmimarkspackagecommand.o source/commands/getoturepcommand.o source/commands/getotuscommand.o source/commands/getrabundcommand.o source/commands/getrelabundcommand.o source/commands/getsabundcommand.o source/commands/getseqscommand.o source/commands/getsharedotucommand.o source/commands/heatmapcommand.o source/commands/heatmapsimcommand.o source/commands/helpcommand.o source/commands/homovacommand.o source/commands/indicatorcommand.o source/commands/kruskalwalliscommand.o source/commands/lefsecommand.o source/commands/libshuffcommand.o source/commands/listotuscommand.o source/commands/listseqscommand.o source/commands/makebiomcommand.o source/commands/makeclrcommand.o source/commands/makecontigscommand.o source/commands/makefastqcommand.o source/commands/makefilecommand.o source/commands/makegroupcommand.o source/commands/makelefsecommand.o source/commands/makelookupcommand.o source/commands/makesharedcommand.o source/commands/mantelcommand.o source/commands/mergecountcommand.o source/commands/mergefilecommand.o source/commands/mergegroupscommand.o source/commands/mergeotuscommand.o source/commands/mergesfffilecommand.o source/commands/mergetaxsummarycommand.o source/commands/metastatscommand.o source/commands/mgclustercommand.o source/commands/mimarksattributescommand.o source/commands/newcommandtemplate.o source/commands/nmdscommand.o source/commands/nocommands.o source/commands/normalizesharedcommand.o source/commands/otuassociationcommand.o source/commands/otuhierarchycommand.o source/commands/pairwiseseqscommand.o source/commands/parsimonycommand.o source/commands/pcacommand.o source/commands/pcoacommand.o source/commands/pcrseqscommand.o source/commands/phylodiversitycommand.o source/commands/phylotypecommand.o source/commands/preclustercommand.o source/commands/primerdesigncommand.o source/commands/quitcommand.o source/commands/rarefactcommand.o source/commands/rarefactsharedcommand.o source/commands/removedistscommand.o source/commands/removegroupscommand.o source/commands/removelineagecommand.o source/commands/removeotuscommand.o source/commands/removerarecommand.o source/commands/removeseqscommand.o source/commands/renamefilecommand.o source/commands/renameseqscommand.o source/commands/reversecommand.o source/commands/screenseqscommand.o source/commands/sensspeccommand.o source/commands/seqerrorcommand.o source/commands/seqsummarycommand.o source/commands/setcurrentcommand.o source/commands/setdircommand.o source/commands/setlogfilecommand.o source/commands/setseedcommand.o source/commands/sffinfocommand.o source/commands/sffmultiplecommand.o source/commands/shhhercommand.o source/commands/shhhseqscommand.o source/commands/sortseqscommand.o source/commands/sparcccommand.o source/commands/splitabundcommand.o source/commands/splitgroupscommand.o source/commands/sracommand.o source/commands/srainfocommand.o source/commands/subsamplecommand.o source/commands/summarycommand.o source/commands/summaryqualcommand.o source/commands/summarysharedcommand.o source/commands/summarytaxcommand.o source/commands/systemcommand.o source/commands/translateseqscommand.o source/commands/treesharedcommand.o source/commands/trimflowscommand.o source/commands/trimseqscommand.o source/commands/unifracunweightedcommand.o source/commands/unifracweightedcommand.o source/commands/uniqueseqscommand.o source/commands/venncommand.o source/communitytype/communitytype.o source/communitytype/kmeans.o source/communitytype/pam.o source/communitytype/qFinderDMM.o source/datastructures/alignment.o source/datastructures/alignmentcell.o source/datastructures/alignmentdb.o source/datastructures/aminoacid.o source/datastructures/biom.o source/datastructures/biomhdf5.o source/datastructures/biomsimple.o source/datastructures/contigsreport.o source/datastructures/counttable.o source/datastructures/designmap.o source/datastructures/distancedb.o source/datastructures/fastamap.o source/datastructures/fastqread.o source/datastructures/filefile.o source/datastructures/flowdata.o source/datastructures/fullmatrix.o source/datastructures/groupmap.o source/datastructures/kmer.o source/datastructures/kmeralign.o source/datastructures/kmerdb.o source/datastructures/listvector.o source/datastructures/nameassignment.o source/datastructures/oligos.o source/datastructures/optiblastmatrix.o source/datastructures/optidata.o source/datastructures/optidb.o source/datastructures/optimatrix.o source/datastructures/optirefmatrix.o source/datastructures/ordervector.o source/datastructures/picrust.o source/datastructures/protein.o source/datastructures/proteindb.o source/datastructures/qualityscores.o source/datastructures/rabundfloatvector.o source/datastructures/rabundvector.o source/datastructures/report.o source/datastructures/sabundvector.o source/datastructures/sequence.o source/datastructures/sequencecountparser.o source/datastructures/sequencedb.o source/datastructures/sequenceparser.o source/datastructures/sffheader.o source/datastructures/sffread.o source/datastructures/sharedclrvector.o source/datastructures/sharedclrvectors.o source/datastructures/sharedlistvector.o source/datastructures/sharedordervector.o source/datastructures/sharedrabundfloatvector.o source/datastructures/sharedrabundfloatvectors.o source/datastructures/sharedrabundvector.o source/datastructures/sharedrabundvectors.o source/datastructures/sparsedistancematrix.o source/datastructures/sparsematrix.o source/datastructures/suffixdb.o source/datastructures/suffixnodes.o source/datastructures/suffixtree.o source/datastructures/taxonomy.o source/datastructures/tree.o source/datastructures/treemap.o source/datastructures/treenode.o source/engines/batchengine.o source/engines/interactengine.o source/engines/scriptengine.o source/metastats/mothurfisher.o source/metastats/mothurmetastats.o source/read/readblast.o source/read/readcluster.o source/read/readcolumn.o source/read/readphylip.o source/read/readphylipvector.o source/read/readtree.o source/read/splitmatrix.o source/read/treereader.o source/svm/svm.o source/alignreport.o source/averagelinkage.o source/calcsparcc.o source/cluster.o source/clusterclassic.o source/collect.o source/commandfactory.o source/commandoptionparser.o source/completelinkage.o source/consensus.o source/currentfile.o source/dlibshuff.o source/fileoutput.o source/gotohoverlap.o source/heatmap.o source/heatmapsim.o source/inputdata.o source/libshuff.o source/linearalgebra.o source/mothur.o source/mothurout.o source/myseqdist.o source/nast.o source/needlemanoverlap.o source/noalign.o source/opticluster.o source/optifitcluster.o source/optionparser.o source/overlap.o source/raredisplay.o source/rarefact.o source/refchimeratest.o source/sensspeccalc.o source/seqnoise.o source/singlelinkage.o source/slibshuff.o source/subsample.o source/summary.o source/trialSwap2.o source/trimoligos.o source/utils.o source/validcalculator.o source/validparameter.o source/venn.o source/vsearchfileparser.o source/weightedlinkage.o source/wilcox.o -L/usr/local/lib -lreadline =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Staging for mothur-1.48.2 ===> Generating temporary packing list mkdir -p /wrkdirs/usr/ports/biology/mothur/work/stage/usr/local/bin mv mothur /wrkdirs/usr/ports/biology/mothur/work/stage/usr/local/bin/mothur ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-05-05T03:24:07+0000' 'PKG_NOTE_ports_top_git_hash=57a50b106b87' 'PKG_NOTE_ports_top_checkout_unclean=yes' 'PKG_NOTE_port_git_hash=46492d92adae' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=nobody UID=65534 GID=65534 ===> Building packages for mothur-1.48.2 ===> Building mothur-1.48.2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for mothur-1.48.2 build of biology/mothur | mothur-1.48.2 ended at Sun May 4 23:29:20 EDT 2025 build time: 00:05:14